Reconstruction of phylogenetic trees is a fundamental problem in computational biology. While excellent heuristic methods are available for many variants of this problem, new advances in phylogeny ...

We present in this paper the detailed field-programmable gate-array (FPGA) design of the Maximum Parsimony method for molecular-based phylogenetic analysis and its implementation on the nodes of an ...

Sourdis, J., & Nei, M. (1988). Relative Efficiencies of the Maximum Parsimony and Distance-Matrix Methods in Obtaining the Correct Phylogenetic Tree. Molecular Biology and Evolution, 5, 298-311. has ...

DOI: 10.1016/j.cpt.2024.04.003 ... Bingxin Lu, Kit Curtius, Trevor A Graham, Ziheng Yang, Chris P Barnes (2023) CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple ...

Figure 1. Maximum likelihood tree illustrating the phylogeny of Exidia sensu lato based on the combined ITS+nLSU dataset. Branches are labeled with maximum likelihood bootstrap >50%, Bayesian ...

If you use this script, you must cite this script and cite TNT. I kindly request that you acknowledge Guoyi Zhang in your Acknowledgements. This script follows MIT License. Zhang G. guoyi.run: ...

Abstract Evolutionary inferences require reliable phylogenies. Morphological data have traditionally been analyzed using maximum parsimony, but recent simulation studies have suggested that Bayesian ...

Ancestral sequence reconstruction (ASR) is a still-burgeoning method that has revealed many key mechanisms of molecular evolution. One criticism of the approach is an inability to validate its ...

Phylogenetic networks are used to display the relationship of different species whose evolution is not treelike, which is the case, for instance, in the presence of hybridization events or horizontal ...